I can't really tell anything from that picture :-P. I would say instead of going worst case first, start with something that we know could be fixed easily (I.E. bed leveling, print head distances , extruder calibration, etc.)
Consistency of the area in which it failed to extrude tells me that there is something fundamentally different about that area that he is printing in.
EDIT:
File looks fine.
Looking at the pictures closer, I still think that checking print head distance should be first. Is this the first time printing on the glass bed? Did you adjust the z end stop screw to account for the additional height of the glass bed?
SD3 w/ mods:
Glass bed with QU-BD heat pad upgrade, threadless ballscrew w/ 8mm smooth rod, spectra line belt replacement, lawsy MK5 extruder, Lawsy replacement carriage, E3D hotend, Ramps 1.4 w/ reprap discount controller, DRV8825 drivers, 12v 30A PS, Acrylic case, Overkill Y-idlers, Filament alarm, Extruder fan + more.