Hey heartlander, should be a pretty easy fix here. It sounds like you wires in your extruder are a little loose. take a small flat blade screwdriver and push the wires in the connectors firmly.
These IDC connectors have a bad habit of not crimping well. I have a hand crimper for them and I still get intermittent connections every now and then.
SD3 w/ mods:
Glass bed with QU-BD heat pad upgrade, threadless ballscrew w/ 8mm smooth rod, spectra line belt replacement, lawsy MK5 extruder, Lawsy replacement carriage, E3D hotend, Ramps 1.4 w/ reprap discount controller, DRV8825 drivers, 12v 30A PS, Acrylic case, Overkill Y-idlers, Filament alarm, Extruder fan + more.