If you go into your slicer > print settings > advanced your wall thickness should match the Perimeters. so you will need to set your extrusion multiplier accordingly.
.42 is default for extrusion width but check what you have and do the calculations based on that. The formula is:
(setting width/measured width)*current extrusion multiplier = New Extrusion Multplier
So assuming your current extrusion multiplier is set to 1 and the width setting is .42 then it will look like this.
(.42/.55)*1= .76 ....
Other things that I notice from the test print. I looks like you bed isn't level and your z needs to come up some still like you said. I would check those 3 things but I would say it looks pretty good otherwise.
SD3 w/ mods:
Glass bed with QU-BD heat pad upgrade, threadless ballscrew w/ 8mm smooth rod, spectra line belt replacement, lawsy MK5 extruder, Lawsy replacement carriage, E3D hotend, Ramps 1.4 w/ reprap discount controller, DRV8825 drivers, 12v 30A PS, Acrylic case, Overkill Y-idlers, Filament alarm, Extruder fan + more.