Arcadenut, I've been going through similar situation as you (solidoodle 3, basic model, arrived in March), I'd like to ask you a few questions.
My problem is the printer is doing a pretty OK job, with the one exception I've noticed is the top layer is never quite "sealed", as the perimeter has tiny gaps along its inside edge between it and the top inside layer, but this just could be a problem with the slicer I am using (using Repetier-host to slice and repetier-server to print). Other thing is the layers are ever so slightly misaligned, making the outside edges of the print really rough.
Those two problems pale in comparison to the warp-age I get on my prints, as the prints curl and bend, most of the prints don't make it a cm up before the print head rubs the warped edge, knocks the print out of alignment, yadayada. So, glass, hairspray and enclosure, to minimize warping and at least get prints to finish so I can start troubleshooting the minor problems.
1) Planning on going to big box hardware store to get some glass, they have 3/32'' thick panels, would this work for me, is this similar to what you used?
2) Planning on picking up a sheet of lexan 0.093'' thickness, cutting into 4 squares, and affixing the panels to the printer with some aluminum tape. Not sure what I'm going to do for the top panel, most likely let it sit. Might buy some foam tape and affix that to the panels so they seal better.
3) And finally, was there any particular brand of hairspray that got better results? How thick of coating do you need, a light dusting, like a first coat of a nice air brushed paint job? Or a real thick globby coating?
I do have some burnt plastic leaking where you can see threads (above the hot end but below the rest of the assembly, some browned plastic oozes down on to the top of the threads you can see, sorry I don't know the terminology of the extruder assembly). Is this bad? I don't want to break my 800 printer already.
Anyways, sorry for the long post, glad to hear you are getting this issues solved, because these are the exact things I need to work out.