A couple of questions that would help us determine which of a few issues this could be:
* Is the extruder making noise (buzzing, clicking) - i.e. is it trying to extrude while printing, or is it completely silent?
* Is the "dry run" button enabled in R-H - this deliberately does exactly this. I know I have accidentally pressed this on occasion!!
* How do your temperature graph and log output look? Anything unusual (e.g. temperature errors - look for "M999"? temperature drops?)
Please also have a search through some of these to learn about possible similar issues others have had: www.google.com/search?q=site%3Asoliforu … trude+stop
SD3. Mk2b + glass, heated enclosure, GT2 belts, direct drive y shaft, linear bearings, bowden-feed E3D v5 w/ 0.9° stepper
Smoothieboard via Octoprint on RPi